PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002312.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 271aa    MW: 30664.7 Da    PI: 5.4457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002312.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-183483255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI+d ++   + r +lg++ +aeeAa+a+++a+  l+g
  Itr_sc002312.1_g00005.1 34 KFVGVRQRP-SGRWVAEIKDTTQ---NIRMWLGTYESAEEAARAYDQAAFLLRG 83
                             799******.7*********433...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-133483IPR001471AP2/ERF domain
CDDcd000182.41E-273494No hitNo description
SMARTSM003803.3E-3334100IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-173493IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-253494IPR001471AP2/ERF domain
PROSITE profilePS5103220.1923494IPR001471AP2/ERF domain
PRINTSPR003677.6E-73546IPR001471AP2/ERF domain
PRINTSPR003677.6E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEIHFQQQHE DEIFSSLQKE SGWNKQRPRK NKNKFVGVRQ RPSGRWVAEI KDTTQNIRMW  60
LGTYESAEEA ARAYDQAAFL LRGSRSTRTR TNFETIAPPD SNSPLASRIR NLLNTKKKSS  120
AKLQRIGDFS SSSSSSITAS GQSGGSAENQ DTKSSSDEAL DFGYDDEIRE SDDRVFDNTY  180
KPDATSSTSL LQSWSFEQGL EFAQQMIDIP KTEGEGEVVG FSEFERMKVE RSISASLYAV  240
HGVQEYMHMQ AINHSSQTQT QTLWDLPPFF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-143586355ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016495062.11e-73PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLD7TI774e-67D7TI77_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g07250.t011e-66(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-22related to AP2 11